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PubPharm (25)
1
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine learning method
enthalten in:
bioRxiv.org
| 2024
von
de Bernardi Schneider, A.
|
Su, M.
|
Hinrichs, A.
| +11
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2
The unified proposal for classification of human respiratory syncytial virus below the subgroup level
enthalten in:
bioRxiv.org
| 2024
von
Goya, S.
|
Ruis, C.
|
Neher, R.
| +23
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3
A framework for automated scalable designation of viral pathogen lineages from genomic data
enthalten in:
Nature microbiology
| 2024
von
McBroome, J.
|
de Bernardi Schneider, A.
|
Roemer, C.
| +7
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4
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method
enthalten in:
Virus evolution
| 2024
von
de Bernardi Schneider, A.
|
Su, M.
|
Hinrichs, A.
| +11
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5
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations
enthalten in:
Systematic biology
| 2023
von
Kramer, A.
|
Thornlow, B.
|
Ye, C.
| +6
UpdateOf: bioRxiv. 2022 May 18;:. - PMID 35611334
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6
A lung-specific mutational signature enables inference of viral and bacterial respiratory niche
enthalten in:
Microbial genomics
| 2023
von
Ruis, C.
|
Peacock, T.
|
Polo, L.
| +9
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7
Automated Agnostic Designation of Pathogen Lineages
enthalten in:
bioRxiv.org
| 2023
von
McBroome, J.
|
de Bernardi Schneider, A.
|
Roemer, C.
| +7
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8
The UCSC Genome Browser database : 2023 update
enthalten in:
Nucleic acids research
| 2023
von
Nassar, L.
|
Barber, G.
|
Benet-Pagès, A.
| +22
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9
A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control
enthalten in:
bioRxiv.org
| 2022
von
Thornlow, B.
|
Hinrichs, A.
|
Jain, M.
| +19
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10
The UCSC SARS-CoV-2 Genome Browser
enthalten in:
bioRxiv.org
| 2022
von
Fernandes, J.
|
Hinrichs, A.
|
Clawson, H.
| +15
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