The unified proposal for classification of human respiratory syncytial virus below the subgroup level
Abstract A globally implemented unified classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. Here, we formulate the global consensus of HRSV classification based on the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to NCBI and GISAID up to March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B, providing guidelines for prospective lineages definition. Our classification demonstrated robustness in its applicability to both complete and partial genomes. In addition, it allowed the observation of notable lineage replacements and the identification of lineages exclusively detected since the COVID-19 pandemic. We envision that this unified HRSV classification proposal will strengthen and facilitate HRSV molecular epidemiology on a global scale..
| Medienart: |
|
|---|
Preprint| Erscheinungsjahr: |
2024 |
|---|---|
| Erschienen: |
2024 |
| Enthalten in: |
bioRxiv.org - (2024) vom: 16. Feb. Zur Gesamtaufnahme - year:2024 |
|---|
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Goya, Stephanie [VerfasserIn] |
|---|
| Links: |
Volltext [kostenfrei] |
|---|
| Themen: |
|---|
| doi: |
10.1101/2024.02.13.24302237 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
XBI04251259X |
|---|
| LEADER | 01000caa a22002652 4500 | ||
|---|---|---|---|
| 001 | XBI04251259X | ||
| 003 | DE-627 | ||
| 005 | 20240217134614.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 240215s2024 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1101/2024.02.13.24302237 |2 doi | |
| 035 | |a (DE-627)XBI04251259X | ||
| 035 | |a (biorXiv)10.1101/2024.02.13.24302237 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Goya, Stephanie |e verfasserin |0 (orcid)0000-0001-7479-3064 |4 aut | |
| 245 | 1 | 0 | |a The unified proposal for classification of human respiratory syncytial virus below the subgroup level |
| 264 | 1 | |c 2024 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 520 | |a Abstract A globally implemented unified classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. Here, we formulate the global consensus of HRSV classification based on the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to NCBI and GISAID up to March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B, providing guidelines for prospective lineages definition. Our classification demonstrated robustness in its applicability to both complete and partial genomes. In addition, it allowed the observation of notable lineage replacements and the identification of lineages exclusively detected since the COVID-19 pandemic. We envision that this unified HRSV classification proposal will strengthen and facilitate HRSV molecular epidemiology on a global scale. | ||
| 650 | 4 | |a Biology |7 (dpeaa)DE-84 | |
| 650 | 4 | |a 570 |7 (dpeaa)DE-84 | |
| 700 | 1 | |a Ruis, Christopher |4 aut | |
| 700 | 1 | |a Neher, Richard A. |0 (orcid)0000-0003-2525-1407 |4 aut | |
| 700 | 1 | |a Meijer, Adam |0 (orcid)0000-0001-8074-7582 |4 aut | |
| 700 | 1 | |a Aziz, Ammar |4 aut | |
| 700 | 1 | |a Hinrichs, Angie S. |0 (orcid)0000-0002-1697-1130 |4 aut | |
| 700 | 1 | |a von Gottberg, Anne |0 (orcid)0000-0002-0243-7455 |4 aut | |
| 700 | 1 | |a Roemer, Cornelius |0 (orcid)0000-0002-6138-6539 |4 aut | |
| 700 | 1 | |a Amoako, Daniel G. |0 (orcid)0000-0003-3551-3458 |4 aut | |
| 700 | 1 | |a Acuña, Dolores |0 (orcid)0000-0002-7671-7871 |4 aut | |
| 700 | 1 | |a McBroome, Jakob |0 (orcid)0000-0002-5002-5156 |4 aut | |
| 700 | 1 | |a Otieno, James R. |0 (orcid)0000-0001-9790-2307 |4 aut | |
| 700 | 1 | |a Bhiman, Jinal N. |0 (orcid)0000-0001-6354-4003 |4 aut | |
| 700 | 1 | |a Everatt, Josie |0 (orcid)0000-0002-0373-2093 |4 aut | |
| 700 | 1 | |a Muñoz-Escalante, Juan C. |0 (orcid)0000-0002-7284-0194 |4 aut | |
| 700 | 1 | |a Ramaekers, Kaat |0 (orcid)0000-0002-7958-4891 |4 aut | |
| 700 | 1 | |a Duggan, Kate |4 aut | |
| 700 | 1 | |a Presser, Lance D. |0 (orcid)0000-0003-3610-3215 |4 aut | |
| 700 | 1 | |a Urbanska, Laura |4 aut | |
| 700 | 1 | |a Venter, Marietjie |0 (orcid)0000-0003-2696-824X |4 aut | |
| 700 | 1 | |a Wolter, Nicole |0 (orcid)0000-0002-9526-0133 |4 aut | |
| 700 | 1 | |a Peret, Teresa C. T. |0 (orcid)0000-0003-2658-6831 |4 aut | |
| 700 | 1 | |a Salimi, Vahid |0 (orcid)0000-0002-8541-7846 |4 aut | |
| 700 | 1 | |a Potdar, Varsha |0 (orcid)0000-0002-7535-7878 |4 aut | |
| 700 | 1 | |a Borges, Vítor |0 (orcid)0000-0003-3767-2209 |4 aut | |
| 700 | 1 | |a Viegas, Mariana |0 (orcid)0000-0002-6506-1635 |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t bioRxiv.org |g (2024) vom: 16. Feb. |
| 773 | 1 | 8 | |g year:2024 |g day:16 |g month:02 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1101/2024.02.13.24302237 |z kostenfrei |3 Volltext |
| 912 | |a GBV_XBI | ||
| 951 | |a AR | ||
| 952 | |j 2024 |b 16 |c 02 | ||