Details der Publikation - The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

A global genome database of all of Earth's species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ~1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 34 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects..

Medienart:	Preprint

Erscheinungsjahr:	2024
Erschienen:	2024

Enthalten in:	bioRxiv.org - (2024) vom: 25. März Zur Gesamtaufnahme - year:2024

Sprache:	Englisch

Beteiligte Personen:	Mc Cartney, Ann M [VerfasserIn] Formenti, Giulio [VerfasserIn] Mouton, Alice [VerfasserIn] De Panis, Diego [VerfasserIn] Marins, Luisa S [VerfasserIn] Leitao, Henrique G [VerfasserIn] Diedericks, Genevieve [VerfasserIn] Kirangwa, Joseph [VerfasserIn] Morselli, Marco [VerfasserIn] Salces, Judit [VerfasserIn] Escudero, Nuria [VerfasserIn] Iannucci, Alessio [VerfasserIn] Natali, Chiara [VerfasserIn] Svardal, Hannes [VerfasserIn] Fernandez, Rosa [VerfasserIn] De Pooter, Tim [VerfasserIn] Joris, Geert [VerfasserIn] Strazisar, Mojca [VerfasserIn] Wood, Jo [VerfasserIn] Herron, Katie E [VerfasserIn] Seehausen, Ole [VerfasserIn] Watts, Phillip C [VerfasserIn] Shaw, Felix [VerfasserIn] Davey, Robert P [VerfasserIn] Minotto, Alice [VerfasserIn] Fernandez Gonzalez, Jose Maria [VerfasserIn] Bohne, Astrid [VerfasserIn] Alegria, Carla [VerfasserIn] Alioto, Tyler [VerfasserIn] Alves, Paulo C [VerfasserIn] Amorim, Isabel R [VerfasserIn] Aury, Jean-Marc [VerfasserIn] Backstrom, Niclas [VerfasserIn] Baldrian, Petr [VerfasserIn] Ballarin, Loriano [VerfasserIn] Baltrunaite, Laima [VerfasserIn] Barta, Endre [VerfasserIn] BedHom, Bertrand [VerfasserIn] Belser, Caroline [VerfasserIn] Bergsten, Johannes [VerfasserIn] Bertrand, Laurie [VerfasserIn] Bilandija, Helena [VerfasserIn] Binzer-Panchal, Mahesh [VerfasserIn] Bista, Iliana [VerfasserIn] Blaxter, Mark [VerfasserIn] Borges, Paulo AV [VerfasserIn] Borges Dias, Guilherme [VerfasserIn] Bosse, Mirte [VerfasserIn] Brown, Tom [VerfasserIn] Bruggmann, Remy [VerfasserIn] Buena-Atienza, Elena [VerfasserIn] Burgin, Josephine [VerfasserIn] Buzan, Elena [VerfasserIn] Cariani, Alessia [VerfasserIn] Casadei, Nicolas [VerfasserIn] Chiara, Matteo [VerfasserIn] Chozas, Sergio [VerfasserIn] Ciampor, Fedor [VerfasserIn] Crottini, Angelica [VerfasserIn] Cruaud, Corinne [VerfasserIn] Cruz, Fernando [VerfasserIn] Dalen, Love [VerfasserIn] De Biase, Alessio [VerfasserIn] del Campo, Javier [VerfasserIn] Delic, Teo [VerfasserIn] Dennis, Alice B [VerfasserIn] Derks, Martijn FL [VerfasserIn] Diroma, Maria Angela [VerfasserIn] Djan, Mihajla [VerfasserIn] Duprat, Simone [VerfasserIn] Eleftheriadi, Klara [VerfasserIn] Feulner, Philine GD [VerfasserIn] Flot, Jean-Francois [VerfasserIn] Forni, Giobbe [VerfasserIn] Fosso, Bruno [VerfasserIn] Fournier, Pascal [VerfasserIn] Fournier-Chambrillon, Christine [VerfasserIn] Gabaldon, Toni [VerfasserIn] Garg, Shilpa [VerfasserIn] Gissi, Carmela [VerfasserIn] Giupponi, Luca [VerfasserIn] Gomez-Garrido, Jessica [VerfasserIn] Gonzalez, Josefa [VerfasserIn] Grilo, Miguel L [VerfasserIn] Gruening, Bjoern [VerfasserIn] Guerin, Thomas [VerfasserIn] Guiglielmoni, Nadege [VerfasserIn] Gut, Marta [VerfasserIn] Haesler, Marcel P [VerfasserIn] Hahn, Christoph [VerfasserIn] Halpern, Balint [VerfasserIn] Harrison, Peter [VerfasserIn] Heintz, Julia [VerfasserIn] Hindrikson, Maris [VerfasserIn] Hoglund, Jacob [VerfasserIn] Howe, Kerstin [VerfasserIn] Hughes, Graham [VerfasserIn] Istace, Benjamin [VerfasserIn] Cock, Mark J. [VerfasserIn] Jancekovic, Franc [VerfasserIn] Jonsson, Zophonias O [VerfasserIn] Joye-Dind, Sagane [VerfasserIn] Koskimaki, Janne J. [VerfasserIn] Krystufek, Boris [VerfasserIn] Kubacka, Justyna [VerfasserIn] Kuhl, Heiner [VerfasserIn] Kusza, Szilvia [VerfasserIn] Labadie, Karine [VerfasserIn] Lahteenaro, Meri [VerfasserIn] Lantz, Henrik [VerfasserIn] Lavrinienko, Anton [VerfasserIn] Leclere, Lucas [VerfasserIn] Lopes, Ricardo Jorge [VerfasserIn] Madsen, Ole [VerfasserIn] Magdelenat, Ghislaine [VerfasserIn] Magoga, Giulia [VerfasserIn] Manousaki, Tereza [VerfasserIn] Mappes, Tapio [VerfasserIn] Marques, Joao Pedro [VerfasserIn] Martinez Redondo, Gemma I [VerfasserIn] Maumus, Florian [VerfasserIn] McCarthy, Shane A. [VerfasserIn] Megens, Hendrik-Jan [VerfasserIn] Melo-Ferreira, Jose [VerfasserIn] Mendes, Sofia L [VerfasserIn] Montagna, Matteo [VerfasserIn] Moreno, Joao [VerfasserIn] Mosbech, Mai-Britt [VerfasserIn] Moura, Monica [VerfasserIn] Musilova, Zuzana [VerfasserIn] Myers, Eugene [VerfasserIn] Nash, Will J. [VerfasserIn] Nater, Alexander [VerfasserIn] Nicholson, Pamela [VerfasserIn] Niell, Manuel [VerfasserIn] Nijland, Reindert [VerfasserIn] Noel, Benjamin [VerfasserIn] Noren, Karin [VerfasserIn] Oliveira, Pedro H [VerfasserIn] Olsen, Remi-Andre [VerfasserIn] Ometto, Lino [VerfasserIn] Oomen, Rebekah A [VerfasserIn] Ossowski, Stephan [VerfasserIn] Palinauskas, Vaidas [VerfasserIn] Palsson, Snaebjorn [VerfasserIn] Panibe, Jerome P [VerfasserIn] Pauperio, Joana [VerfasserIn] Pavlek, Martina [VerfasserIn] Payen, Emilie [VerfasserIn] Pawlowska, Julia [VerfasserIn] Pellicer, Jaume [VerfasserIn] Pesole, Graziano [VerfasserIn] Pimenta, Joao [VerfasserIn] Pippel, Martin [VerfasserIn] Pirttila, Anna Maria [VerfasserIn] Poulakakis, Nikos [VerfasserIn] Rajan, Jeena [VerfasserIn] Rego, Ruben MC [VerfasserIn] Resendes, Roberto [VerfasserIn] Resl, Philipp [VerfasserIn] Riesgo, Ana [VerfasserIn] Rodin-Morch, Patrik [VerfasserIn] Soares, Andre ER [VerfasserIn] Rodriguez Fernandes, Carlos [VerfasserIn] Romeiras, Maria M. [VerfasserIn] Roxo, Guilherme [VerfasserIn] Ruber, Lukas [VerfasserIn] Ruiz-Lopez, Maria Jose [VerfasserIn] Saarma, Urmas [VerfasserIn] Silva, Luis P [VerfasserIn] Sim-Sim, Manuela [VerfasserIn] Soler, Lucile [VerfasserIn] Sousa, Vitor C [VerfasserIn] Sousa Santos, Carla [VerfasserIn] Spada, Alberto [VerfasserIn] Stefanovic, Milomir [VerfasserIn] Steger, Viktor [VerfasserIn] Stiller, Josefin [VerfasserIn] Stock, Matthias [VerfasserIn] Struck, Torsten Hugo H [VerfasserIn] Sudasinghe, Hiranya [VerfasserIn] Tapanainen, Riikka [VerfasserIn] Tellgren-Roth, Christian [VerfasserIn] Trindade, Helena [VerfasserIn] Tukalenko, Yevhen [VerfasserIn] Urso, Ilenia [VerfasserIn] Vacherie, Benoit [VerfasserIn] Van Belleghem, Steven M [VerfasserIn] van Oers, Kees [VerfasserIn] Vargas-Chavez, Carlos [VerfasserIn] Velickovic, Nevena [VerfasserIn] Vella, Noel [VerfasserIn] Vella, Adriana [VerfasserIn] Vernesi, Cristiano [VerfasserIn] Vicente, Sara [VerfasserIn] Villa, Sara [VerfasserIn] Vinnere Pettersson, Olga [VerfasserIn] Volckaert, Filip AM [VerfasserIn] Voros, Judit [VerfasserIn] Wincker, Patrick [VerfasserIn] Winkler, Sylke [VerfasserIn] Ciofi, Claudio [VerfasserIn] Waterhouse, Robert M [VerfasserIn] Mazzoni, Camila J [VerfasserIn]

Links:	Volltext [kostenfrei]

Themen:	570 Biology

doi:	10.1101/2023.09.25.559365

funding:
Förderinstitution / Projekttitel:

PPN (Katalog-ID):	XBI040986527

Internformat


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700	1		\|a Oomen, Rebekah A \|0 (orcid)0000-0002-2094-5592 \|4 aut
700	1		\|a Ossowski, Stephan \|0 (orcid)0000-0002-7416-9568 \|4 aut
700	1		\|a Palinauskas, Vaidas \|0 (orcid)0000-0002-4714-0305 \|4 aut
700	1		\|a Palsson, Snaebjorn \|0 (orcid)0000-0002-4297-3500 \|4 aut
700	1		\|a Panibe, Jerome P \|0 (orcid)0000-0003-2653-5997 \|4 aut
700	1		\|a Pauperio, Joana \|0 (orcid)0000-0003-2569-0768 \|4 aut
700	1		\|a Pavlek, Martina \|0 (orcid)0000-0001-6710-0581 \|4 aut
700	1		\|a Payen, Emilie \|0 (orcid)0000-0003-0142-4473 \|4 aut
700	1		\|a Pawlowska, Julia \|0 (orcid)0000-0003-4914-5182 \|4 aut
700	1		\|a Pellicer, Jaume \|0 (orcid)0000-0001-7632-9775 \|4 aut
700	1		\|a Pesole, Graziano \|0 (orcid)0000-0003-3663-0859 \|4 aut
700	1		\|a Pimenta, Joao \|0 (orcid)0000-0002-0989-8545 \|4 aut
700	1		\|a Pippel, Martin \|0 (orcid)0000-0002-8134-5929 \|4 aut
700	1		\|a Pirttila, Anna Maria \|0 (orcid)0000-0002-2455-6375 \|4 aut
700	1		\|a Poulakakis, Nikos \|0 (orcid)0000-0002-9982-7416 \|4 aut
700	1		\|a Rajan, Jeena \|0 (orcid)0000-0002-3613-0013 \|4 aut
700	1		\|a Rego, Ruben MC \|0 (orcid)0000-0002-7893-6525 \|4 aut
700	1		\|a Resendes, Roberto \|0 (orcid)0000-0003-1505-651X \|4 aut
700	1		\|a Resl, Philipp \|0 (orcid)0000-0002-7841-6060 \|4 aut
700	1		\|a Riesgo, Ana \|0 (orcid)0000-0002-7993-1523 \|4 aut
700	1		\|a Rodin-Morch, Patrik \|0 (orcid)0000-0001-6737-1488 \|4 aut
700	1		\|a Soares, Andre ER \|0 (orcid)0000-0002-7768-2199 \|4 aut
700	1		\|a Rodriguez Fernandes, Carlos \|0 (orcid)0000-0002-1386-8103 \|4 aut
700	1		\|a Romeiras, Maria M. \|0 (orcid)0000-0002-9373-6302 \|4 aut
700	1		\|a Roxo, Guilherme \|0 (orcid)0000-0003-4326-7699 \|4 aut
700	1		\|a Ruber, Lukas \|0 (orcid)0000-0003-0125-008X \|4 aut
700	1		\|a Ruiz-Lopez, Maria Jose \|0 (orcid)0000-0002-6849-644X \|4 aut
700	1		\|a Saarma, Urmas \|0 (orcid)0000-0002-3222-571X \|4 aut
700	1		\|a Silva, Luis P \|0 (orcid)0000-0003-2358-1277 \|4 aut
700	1		\|a Sim-Sim, Manuela \|0 (orcid)0000-0003-3467-6538 \|4 aut
700	1		\|a Soler, Lucile \|0 (orcid)0000-0002-0121-2393 \|4 aut
700	1		\|a Sousa, Vitor C \|0 (orcid)0000-0003-3575-0875 \|4 aut
700	1		\|a Sousa Santos, Carla \|0 (orcid)0000-0002-4513-5553 \|4 aut
700	1		\|a Spada, Alberto \|0 (orcid)0000-0001-7665-0446 \|4 aut
700	1		\|a Stefanovic, Milomir \|0 (orcid)0000-0001-6294-3782 \|4 aut
700	1		\|a Steger, Viktor \|0 (orcid)0000-0001-8765-1735 \|4 aut
700	1		\|a Stiller, Josefin \|0 (orcid)0000-0001-6009-9581 \|4 aut
700	1		\|a Stock, Matthias \|0 (orcid)0000-0003-4888-8371 \|4 aut
700	1		\|a Struck, Torsten Hugo H \|0 (orcid)0000-0003-3280-6239 \|4 aut
700	1		\|a Sudasinghe, Hiranya \|0 (orcid)0000-0003-0994-3462 \|4 aut
700	1		\|a Tapanainen, Riikka \|0 (orcid)0009-0009-7661-4731 \|4 aut
700	1		\|a Tellgren-Roth, Christian \|0 (orcid)0000-0003-0502-3693 \|4 aut
700	1		\|a Trindade, Helena \|0 (orcid)0000-0002-1209-2622 \|4 aut
700	1		\|a Tukalenko, Yevhen \|0 (orcid)0000-0002-1964-1583 \|4 aut
700	1		\|a Urso, Ilenia \|0 (orcid)0000-0002-6439-6943 \|4 aut
700	1		\|a Vacherie, Benoit \|0 (orcid)0000-0002-1564-0575 \|4 aut
700	1		\|a Van Belleghem, Steven M \|0 (orcid)0000-0001-9399-1007 \|4 aut
700	1		\|a van Oers, Kees \|0 (orcid)0000-0001-6984-906X \|4 aut
700	1		\|a Vargas-Chavez, Carlos \|0 (orcid)0000-0003-3635-1411 \|4 aut
700	1		\|a Velickovic, Nevena \|0 (orcid)0000-0003-0797-269X \|4 aut
700	1		\|a Vella, Noel \|0 (orcid)0000-0003-0080-5709 \|4 aut
700	1		\|a Vella, Adriana \|0 (orcid)0000-0003-2246-5354 \|4 aut
700	1		\|a Vernesi, Cristiano \|0 (orcid)0000-0001-7534-5669 \|4 aut
700	1		\|a Vicente, Sara \|0 (orcid)0000-0002-8538-3586 \|4 aut
700	1		\|a Villa, Sara \|0 (orcid)0000-0002-9238-9839 \|4 aut
700	1		\|a Vinnere Pettersson, Olga \|0 (orcid)0000-0002-5597-1870 \|4 aut
700	1		\|a Volckaert, Filip AM \|0 (orcid)0000-0003-4342-4295 \|4 aut
700	1		\|a Voros, Judit \|0 (orcid)0000-0001-9707-1443 \|4 aut
700	1		\|a Wincker, Patrick \|0 (orcid)0000-0001-7562-3454 \|4 aut
700	1		\|a Winkler, Sylke \|0 (orcid)0000-0002-0915-3316 \|4 aut
700	1		\|a Ciofi, Claudio \|0 (orcid)0000-0001-8537-8659 \|4 aut
700	1		\|a Waterhouse, Robert M \|0 (orcid)0000-0003-4199-9052 \|4 aut
700	1		\|a Mazzoni, Camila J \|0 (orcid)0000-0001-6758-5427 \|4 aut
773	0	8	\|i Enthalten in \|t bioRxiv.org \|g (2024) vom: 25. März
773	1	8	\|g year:2024 \|g day:25 \|g month:03
856	4	0	\|u http://dx.doi.org/10.1101/2023.09.25.559365 \|z kostenfrei \|3 Volltext
912			\|a GBV_XBI
951			\|a AR
952			\|j 2024 \|b 25 \|c 03

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

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