The utility of homologous recombination deficiency biomarkers across cancer types
Abstract Background Genomic alterations in BRCA1/2 and genomic scar signatures are associated with homologous recombination DNA repair deficiency (HRD) and serve as therapeutic biomarkers for platinum and PARP inhibitors in breast and ovarian cancers. However, the clinical significance of these biomarkers in other homologous recombination repair-related genes or other cancer types is not fully understood.Results We analyzed the datasets of all solid cancers from The Cancer Genome Atlas and Cancer Cell Line Encyclopedia, and found that the association between biallelic alterations in the homologous recombination pathway genes and genomic scar signatures differed greatly depending on gender and the presence of somatic TP53 mutation. Additionally, HRD cases identified by a combination of these indicators showed higher sensitivity to DNA-damaging drugs than non-HRD cases both in clinical samples and cell lines.Conclusion Our work provides novel proof of the utility of HRD analysis for all cancer types and will improve the precision and efficacy of chemotherapy selection in clinical oncology..
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Preprint| Erscheinungsjahr: |
2021 |
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| Erschienen: |
2021 |
| Enthalten in: |
bioRxiv.org - (2021) vom: 15. Dez. Zur Gesamtaufnahme - year:2021 |
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| Sprache: |
Englisch |
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| Beteiligte Personen: |
Takamatsu, Shiro [VerfasserIn] |
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| doi: |
10.1101/2021.02.18.21251882 |
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| PPN (Katalog-ID): |
XBI019982224 |
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| 520 | |a Abstract Background Genomic alterations in BRCA1/2 and genomic scar signatures are associated with homologous recombination DNA repair deficiency (HRD) and serve as therapeutic biomarkers for platinum and PARP inhibitors in breast and ovarian cancers. However, the clinical significance of these biomarkers in other homologous recombination repair-related genes or other cancer types is not fully understood.Results We analyzed the datasets of all solid cancers from The Cancer Genome Atlas and Cancer Cell Line Encyclopedia, and found that the association between biallelic alterations in the homologous recombination pathway genes and genomic scar signatures differed greatly depending on gender and the presence of somatic TP53 mutation. Additionally, HRD cases identified by a combination of these indicators showed higher sensitivity to DNA-damaging drugs than non-HRD cases both in clinical samples and cell lines.Conclusion Our work provides novel proof of the utility of HRD analysis for all cancer types and will improve the precision and efficacy of chemotherapy selection in clinical oncology. | ||
| 700 | 1 | |a Brown, J.B. |e verfasserin |4 aut | |
| 700 | 1 | |a Yamaguchi, Ken |e verfasserin |4 aut | |
| 700 | 1 | |a Hamanishi, Junzo |e verfasserin |4 aut | |
| 700 | 1 | |a Yamanoi, Koji |e verfasserin |4 aut | |
| 700 | 1 | |a Takaya, Hisamitsu |e verfasserin |4 aut | |
| 700 | 1 | |a Kaneyasu, Tomoko |e verfasserin |4 aut | |
| 700 | 1 | |a Mori, Seiichi |e verfasserin |4 aut | |
| 700 | 1 | |a Mandai, Masaki |e verfasserin |4 aut | |
| 700 | 1 | |a Matsumura, Noriomi |e verfasserin |4 aut | |
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