Imaging-based representation and stratification of intra-tumor Heterogeneity via tree-edit distance
Personalized medicine is the future of medical practice. In oncology, tumor heterogeneity assessment represents a pivotal step for effective treatment planning and prognosis prediction. Despite new procedures for DNA sequencing and analysis, non-invasive methods for tumor characterization are needed to impact on daily routine. On purpose, imaging texture analysis is rapidly scaling, holding the promise to surrogate histopathological assessment of tumor lesions. In this work, we propose a tree-based representation strategy for describing intra-tumor heterogeneity of patients affected by metastatic cancer. We leverage radiomics information extracted from PET/CT imaging and we provide an exhaustive and easily readable summary of the disease spreading. We exploit this novel patient representation to perform cancer subtyping according to hierarchical clustering technique. To this purpose, a new heterogeneity-based distance between trees is defined and applied to a case study of prostate cancer. Clusters interpretation is explored in terms of concordance with severity status, tumor burden and biological characteristics. Results are promising, as the proposed method outperforms current literature approaches. Ultimately, the proposed method draws a general analysis framework that would allow to extract knowledge from daily acquired imaging data of patients and provide insights for effective treatment planning..
| Medienart: |
|
|---|
Preprint| Erscheinungsjahr: |
2022 |
|---|---|
| Erschienen: |
2022 |
| Enthalten in: |
arXiv.org - (2022) vom: 09. Aug. Zur Gesamtaufnahme - year:2022 |
|---|
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Cavinato, Lara [VerfasserIn] |
|---|
| Links: |
|---|
| Themen: |
510 |
|---|
| doi: |
http://dx.doi.org/10.1038/s41598-022-23752-2 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
XAR036823856 |
|---|
| LEADER | 01000caa a22002652 4500 | ||
|---|---|---|---|
| 001 | XAR036823856 | ||
| 003 | DE-627 | ||
| 005 | 20230429064859.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 220810s2022 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a http://dx.doi.org/10.1038/s41598-022-23752-2 |2 doi | |
| 035 | |a (DE-627)XAR036823856 | ||
| 035 | |a (arXiv)2208.04829 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Cavinato, Lara |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a Imaging-based representation and stratification of intra-tumor Heterogeneity via tree-edit distance |
| 264 | 1 | |c 2022 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 520 | |a Personalized medicine is the future of medical practice. In oncology, tumor heterogeneity assessment represents a pivotal step for effective treatment planning and prognosis prediction. Despite new procedures for DNA sequencing and analysis, non-invasive methods for tumor characterization are needed to impact on daily routine. On purpose, imaging texture analysis is rapidly scaling, holding the promise to surrogate histopathological assessment of tumor lesions. In this work, we propose a tree-based representation strategy for describing intra-tumor heterogeneity of patients affected by metastatic cancer. We leverage radiomics information extracted from PET/CT imaging and we provide an exhaustive and easily readable summary of the disease spreading. We exploit this novel patient representation to perform cancer subtyping according to hierarchical clustering technique. To this purpose, a new heterogeneity-based distance between trees is defined and applied to a case study of prostate cancer. Clusters interpretation is explored in terms of concordance with severity status, tumor burden and biological characteristics. Results are promising, as the proposed method outperforms current literature approaches. Ultimately, the proposed method draws a general analysis framework that would allow to extract knowledge from daily acquired imaging data of patients and provide insights for effective treatment planning. | ||
| 650 | 4 | |a Statistics - Methodology |7 (dpeaa)DE-84 | |
| 650 | 4 | |a Electrical Engineering and Systems Science - Image and Video Processing |7 (dpeaa)DE-84 | |
| 650 | 4 | |a Quantitative Biology - Quantitative Methods |7 (dpeaa)DE-84 | |
| 650 | 4 | |a 510 |7 (dpeaa)DE-84 | |
| 650 | 4 | |a 620 |7 (dpeaa)DE-84 | |
| 650 | 4 | |a 570 |7 (dpeaa)DE-84 | |
| 700 | 1 | |a Pegoraro, Matteo |e verfasserin |4 aut | |
| 700 | 1 | |a Ragni, Alessandra |e verfasserin |4 aut | |
| 700 | 1 | |a Sollini, Martina |e verfasserin |4 aut | |
| 700 | 1 | |a Erba, Anna Paola |e verfasserin |4 aut | |
| 700 | 1 | |a Ieva, Francesca |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t arXiv.org |g (2022) vom: 09. Aug. |
| 773 | 1 | 8 | |g year:2022 |g day:09 |g month:08 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1038/s41598-022-23752-2 |z lizenzpflichtig |3 Volltext |
| 856 | 4 | 0 | |u https://arxiv.org/abs/2208.04829 |z kostenfrei |3 Volltext |
| 912 | |a GBV_XAR | ||
| 912 | |a SSG-OLC-PHA | ||
| 951 | |a AR | ||
| 952 | |j 2022 |b 09 |c 08 | ||