Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis)
Background The Auxin Responsive Factor (ARF) family plays a crucial role in mediating auxin signal transduction and is vital for plant growth and development. However, the function of ARF genes in Korean pine (Pinus koraiensis), a conifer species of significant economic value, remains unclear. Results This study utilized the whole genome of Korean pine to conduct bioinformatics analysis, resulting in the identification of 13 ARF genes. A phylogenetic analysis revealed that these 13 PkorARF genes can be classified into 4 subfamilies, indicating the presence of conserved structural characteristics within each subfamily. Protein interaction prediction indicated that Pkor01G00962.1 and Pkor07G00704.1 may have a significant role in regulating plant growth and development as core components of the PkorARFs family. Additionally, the analysis of RNA-seq and RT-qPCR expression patterns suggested that PkorARF genes play a crucial role in the development process of Korean pine. Conclusion Pkor01G00962.1 and Pkor07G00704.1, which are core genes of the PkorARFs family, play a potentially crucial role in regulating the fertilization and developmental process of Korean pine. This study provides a valuable reference for investigating the molecular mechanism of embryonic development in Korean pine and establishes a foundation for cultivating high-quality Korean pine..
Medienart: |
E-Artikel |
---|
Erscheinungsjahr: |
2024 |
---|---|
Erschienen: |
2024 |
Enthalten in: |
Zur Gesamtaufnahme - volume:24 |
---|---|
Enthalten in: |
BMC plant biology - 24(2024), 1 vom: 10. Apr. |
Sprache: |
Englisch |
---|
Beteiligte Personen: |
Zhang, Yue [VerfasserIn] |
---|
Links: |
Volltext [kostenfrei] |
---|
BKL: | |
---|---|
Themen: |
) |
Anmerkungen: |
© The Author(s) 2024 |
---|
doi: |
10.1186/s12870-024-04827-w |
---|
funding: |
|
---|---|
Förderinstitution / Projekttitel: |
|
PPN (Katalog-ID): |
SPR055482708 |
---|
LEADER | 01000naa a22002652 4500 | ||
---|---|---|---|
001 | SPR055482708 | ||
003 | DE-627 | ||
005 | 20240411064703.0 | ||
007 | cr uuu---uuuuu | ||
008 | 240411s2024 xx |||||o 00| ||eng c | ||
024 | 7 | |a 10.1186/s12870-024-04827-w |2 doi | |
035 | |a (DE-627)SPR055482708 | ||
035 | |a (SPR)s12870-024-04827-w-e | ||
040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
041 | |a eng | ||
082 | 0 | 4 | |a 580 |a 610 |q VZ |
084 | |a 12 |2 ssgn | ||
084 | |a 44.41 |2 bkl | ||
100 | 1 | |a Zhang, Yue |e verfasserin |4 aut | |
245 | 1 | 0 | |a Genome-wide identification and expression analysis of ARF gene family in embryonic development of Korean pine (Pinus koraiensis) |
264 | 1 | |c 2024 | |
336 | |a Text |b txt |2 rdacontent | ||
337 | |a Computermedien |b c |2 rdamedia | ||
338 | |a Online-Ressource |b cr |2 rdacarrier | ||
500 | |a © The Author(s) 2024 | ||
520 | |a Background The Auxin Responsive Factor (ARF) family plays a crucial role in mediating auxin signal transduction and is vital for plant growth and development. However, the function of ARF genes in Korean pine (Pinus koraiensis), a conifer species of significant economic value, remains unclear. Results This study utilized the whole genome of Korean pine to conduct bioinformatics analysis, resulting in the identification of 13 ARF genes. A phylogenetic analysis revealed that these 13 PkorARF genes can be classified into 4 subfamilies, indicating the presence of conserved structural characteristics within each subfamily. Protein interaction prediction indicated that Pkor01G00962.1 and Pkor07G00704.1 may have a significant role in regulating plant growth and development as core components of the PkorARFs family. Additionally, the analysis of RNA-seq and RT-qPCR expression patterns suggested that PkorARF genes play a crucial role in the development process of Korean pine. Conclusion Pkor01G00962.1 and Pkor07G00704.1, which are core genes of the PkorARFs family, play a potentially crucial role in regulating the fertilization and developmental process of Korean pine. This study provides a valuable reference for investigating the molecular mechanism of embryonic development in Korean pine and establishes a foundation for cultivating high-quality Korean pine. | ||
650 | 4 | |a Korean pine ( |7 (dpeaa)DE-He213 | |
650 | 4 | |a ) |7 (dpeaa)DE-He213 | |
650 | 4 | |a Auxin response factor |7 (dpeaa)DE-He213 | |
650 | 4 | |a Gene family |7 (dpeaa)DE-He213 | |
650 | 4 | |a Phylogenetic analysis |7 (dpeaa)DE-He213 | |
650 | 4 | |a Expression analysis |7 (dpeaa)DE-He213 | |
650 | 4 | |a Embryonic development |7 (dpeaa)DE-He213 | |
700 | 1 | |a Wu, Wei |e verfasserin |4 aut | |
700 | 1 | |a Shen, Hailong |e verfasserin |4 aut | |
700 | 1 | |a Yang, Ling |e verfasserin |4 aut | |
773 | 0 | 8 | |i Enthalten in |t BMC plant biology |d BioMed Central, 2001 |g 24(2024), 1 vom: 10. Apr. |w (DE-627)SPR027278042 |w (DE-600)2059868-3 |x 1471-2229 |7 nnns |
773 | 1 | 8 | |g volume:24 |g year:2024 |g number:1 |g day:10 |g month:04 |
856 | 4 | 0 | |u https://dx.doi.org/10.1186/s12870-024-04827-w |m X:VERLAG |x 0 |z kostenfrei |3 Volltext |
912 | |a GBV_SPRINGER | ||
912 | |a SSG-OLC-PHA | ||
912 | |a SSG-OPC-PHA | ||
936 | b | k | |a 44.41 |q VZ |
951 | |a AR | ||
952 | |d 24 |j 2024 |e 1 |b 10 |c 04 |