Prioritizing susceptibility genes for the prognosis of male-pattern baldness with transcriptome-wide association study
Background Male-pattern baldness (MPB) is the most common cause of hair loss in men. It can be categorized into three types: type 2 (T2), type 3 (T3), and type 4 (T4), with type 1 (T1) being considered normal. Although various MPB-associated genetic variants have been suggested, a comprehensive study for linking these variants to gene expression regulation has not been performed to the best of our knowledge. Results In this study, we prioritized MPB-related tissue panels using tissue-specific enrichment analysis and utilized single-tissue panels from genotype-tissue expression version 8, as well as cross-tissue panels from context-specific genetics. Through a transcriptome-wide association study and colocalization analysis, we identified 52, 75, and 144 MPB associations for T2, T3, and T4, respectively. To assess the causality of MPB genes, we performed a conditional and joint analysis, which revealed 10, 11, and 54 putative causality genes for T2, T3, and T4, respectively. Finally, we conducted drug repositioning and identified potential drug candidates that are connected to MPB-associated genes. Conclusions Overall, through an integrative analysis of gene expression and genotype data, we have identified robust MPB susceptibility genes that may help uncover the underlying molecular mechanisms and the novel drug candidates that may alleviate MPB..
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2024 |
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| Erschienen: |
2024 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:18 |
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| Enthalten in: |
Human genomics - 18(2024), 1 vom: 02. Apr. |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Choi, Eunyoung [VerfasserIn] |
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| Links: |
Volltext [kostenfrei] |
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| Themen: |
Drug repositioning |
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| Anmerkungen: |
© The Author(s) 2024 |
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| doi: |
10.1186/s40246-024-00591-y |
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| funding: |
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| Förderinstitution / Projekttitel: |
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SPR055392350 |
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| 520 | |a Background Male-pattern baldness (MPB) is the most common cause of hair loss in men. It can be categorized into three types: type 2 (T2), type 3 (T3), and type 4 (T4), with type 1 (T1) being considered normal. Although various MPB-associated genetic variants have been suggested, a comprehensive study for linking these variants to gene expression regulation has not been performed to the best of our knowledge. Results In this study, we prioritized MPB-related tissue panels using tissue-specific enrichment analysis and utilized single-tissue panels from genotype-tissue expression version 8, as well as cross-tissue panels from context-specific genetics. Through a transcriptome-wide association study and colocalization analysis, we identified 52, 75, and 144 MPB associations for T2, T3, and T4, respectively. To assess the causality of MPB genes, we performed a conditional and joint analysis, which revealed 10, 11, and 54 putative causality genes for T2, T3, and T4, respectively. Finally, we conducted drug repositioning and identified potential drug candidates that are connected to MPB-associated genes. Conclusions Overall, through an integrative analysis of gene expression and genotype data, we have identified robust MPB susceptibility genes that may help uncover the underlying molecular mechanisms and the novel drug candidates that may alleviate MPB. | ||
| 650 | 4 | |a Drug repositioning |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Gene prioritization |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Male-pattern baldness |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Phenome-wide association study |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Transcriptome-wide association study |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Song, Jaeseung |4 aut | |
| 700 | 1 | |a Lee, Yubin |4 aut | |
| 700 | 1 | |a Jeong, Yeonbin |4 aut | |
| 700 | 1 | |a Jang, Wonhee |4 aut | |
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