Reference gene selection for quantitative real-time PCR analysis of Hymenopellis radicata under abiotic stress
Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved..
Hymenopellis radicata (H. radicata) is an edible fungus rich in protein and mineral elements, with high edible and medical value. And reference genes suitable for normalization of qRT-PCR data from this species have not been investigated. In this study, therefore, we selected 11 housekeeping genes common in biology. The expression levels of these housekeeping genes were measured in three different tissues and six different abiotic stress treatments in mycelium. They were evaluated for expression stability using online tools. The results showed that gene ACT could be stable expressed in all samples. The expressions of genes TUB and UBQ10 are the most stable under heat stress, ACT and EF are the most stable genes under salt stress, ACT and TUB are the most stable genes under oxidation stress, RPL6 and EF are the most stable genes under pH condition, ACT and RPB2 are the most stable genes under cadmium stress, and RPB2 and UBC are the most stable genes under drought condition. ACT and PP2A are the most stable genes at different tissue sites. This study is of great help to explore the gene expression pattern of H. radicata, and also provides reference for internal reference gene screening under other conditions.
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2024 |
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| Erschienen: |
2024 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:128 |
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| Enthalten in: |
Fungal biology - 128(2024), 1 vom: 10. Feb., Seite 1567-1577 |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Cao, Luping [VerfasserIn] |
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| Links: |
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| Themen: |
Abiotic stresses |
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| Anmerkungen: |
Date Completed 14.02.2024 Date Revised 14.02.2024 published: Print-Electronic Citation Status MEDLINE |
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| doi: |
10.1016/j.funbio.2023.11.004 |
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| funding: |
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| Förderinstitution / Projekttitel: |
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| PPN (Katalog-ID): |
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| 500 | |a published: Print-Electronic | ||
| 500 | |a Citation Status MEDLINE | ||
| 520 | |a Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved. | ||
| 520 | |a Hymenopellis radicata (H. radicata) is an edible fungus rich in protein and mineral elements, with high edible and medical value. And reference genes suitable for normalization of qRT-PCR data from this species have not been investigated. In this study, therefore, we selected 11 housekeeping genes common in biology. The expression levels of these housekeeping genes were measured in three different tissues and six different abiotic stress treatments in mycelium. They were evaluated for expression stability using online tools. The results showed that gene ACT could be stable expressed in all samples. The expressions of genes TUB and UBQ10 are the most stable under heat stress, ACT and EF are the most stable genes under salt stress, ACT and TUB are the most stable genes under oxidation stress, RPL6 and EF are the most stable genes under pH condition, ACT and RPB2 are the most stable genes under cadmium stress, and RPB2 and UBC are the most stable genes under drought condition. ACT and PP2A are the most stable genes at different tissue sites. This study is of great help to explore the gene expression pattern of H. radicata, and also provides reference for internal reference gene screening under other conditions | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a Abiotic stresses | |
| 650 | 4 | |a Hymenopellis radicata | |
| 650 | 4 | |a Normalization | |
| 650 | 4 | |a qRT-PCR | |
| 650 | 4 | |a reference gene | |
| 700 | 1 | |a Zhang, Qin |e verfasserin |4 aut | |
| 700 | 1 | |a Miao, Renyun |e verfasserin |4 aut | |
| 700 | 1 | |a Zhao, Xu |e verfasserin |4 aut | |
| 700 | 1 | |a Ni, Yanqing |e verfasserin |4 aut | |
| 700 | 1 | |a Li, Wensheng |e verfasserin |4 aut | |
| 700 | 1 | |a Feng, Rencai |e verfasserin |4 aut | |
| 700 | 1 | |a Yang, Delong |e verfasserin |4 aut | |
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