Design patterns of biological cells
© 2024 The Authors. BioEssays published by Wiley Periodicals LLC..
Design patterns are generalized solutions to frequently recurring problems. They were initially developed by architects and computer scientists to create a higher level of abstraction for their designs. Here, we extend these concepts to cell biology to lend a new perspective on the evolved designs of cells' underlying reaction networks. We present a catalog of 21 design patterns divided into three categories: creational patterns describe processes that build the cell, structural patterns describe the layouts of reaction networks, and behavioral patterns describe reaction network function. Applying this pattern language to the E. coli central metabolic reaction network, the yeast pheromone response signaling network, and other examples lends new insights into these systems.
| Errataetall: | |
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| Medienart: |
E-Artikel |
| Erscheinungsjahr: |
2024 |
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| Erschienen: |
2024 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:46 |
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| Enthalten in: |
BioEssays : news and reviews in molecular, cellular and developmental biology - 46(2024), 3 vom: 19. März, Seite e2300188 |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Andrews, Steven S [VerfasserIn] |
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| Links: |
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| Themen: |
Cell biology modeling |
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| Anmerkungen: |
Date Completed 27.02.2024 Date Revised 09.03.2024 published: Print-Electronic UpdateOf: ArXiv. 2023 Oct 11;:. - PMID 37873010 Citation Status MEDLINE |
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| doi: |
10.1002/bies.202300188 |
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| Förderinstitution / Projekttitel: |
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| 520 | |a Design patterns are generalized solutions to frequently recurring problems. They were initially developed by architects and computer scientists to create a higher level of abstraction for their designs. Here, we extend these concepts to cell biology to lend a new perspective on the evolved designs of cells' underlying reaction networks. We present a catalog of 21 design patterns divided into three categories: creational patterns describe processes that build the cell, structural patterns describe the layouts of reaction networks, and behavioral patterns describe reaction network function. Applying this pattern language to the E. coli central metabolic reaction network, the yeast pheromone response signaling network, and other examples lends new insights into these systems | ||
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