A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs
IMPORTANCE: This study provides a laboratory framework to ensure ongoing relevance and performance of amplification-based whole genome sequencing to strengthen public health surveillance during extended outbreaks or pandemics. The framework integrates regular reviews of the performance of a genomic surveillance system and highlights the importance of ongoing monitoring and the identification and implementation of improvements to whole genome sequencing methods to enhance public health responses to pathogen outbreaks.
| Medienart: |
E-Artikel |
|---|
| Erscheinungsjahr: |
2023 |
|---|---|
| Erschienen: |
2023 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:11 |
|---|---|
| Enthalten in: |
Microbiology spectrum - 11(2023), 6 vom: 12. Dez., Seite e0220223 |
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Lam, Connie [VerfasserIn] |
|---|
| Links: |
|---|
| Themen: |
Genomic surveillance |
|---|
| Anmerkungen: |
Date Completed 16.12.2023 Date Revised 16.12.2023 published: Print-Electronic Citation Status MEDLINE |
|---|
| doi: |
10.1128/spectrum.02202-23 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
NLM364578750 |
|---|
| LEADER | 01000caa a22002652 4500 | ||
|---|---|---|---|
| 001 | NLM364578750 | ||
| 003 | DE-627 | ||
| 005 | 20231227133215.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 231226s2023 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1128/spectrum.02202-23 |2 doi | |
| 028 | 5 | 2 | |a pubmed24n1230.xml |
| 035 | |a (DE-627)NLM364578750 | ||
| 035 | |a (NLM)37966271 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Lam, Connie |e verfasserin |4 aut | |
| 245 | 1 | 2 | |a A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs |
| 264 | 1 | |c 2023 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a ƒaComputermedien |b c |2 rdamedia | ||
| 338 | |a ƒa Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Date Completed 16.12.2023 | ||
| 500 | |a Date Revised 16.12.2023 | ||
| 500 | |a published: Print-Electronic | ||
| 500 | |a Citation Status MEDLINE | ||
| 520 | |a IMPORTANCE: This study provides a laboratory framework to ensure ongoing relevance and performance of amplification-based whole genome sequencing to strengthen public health surveillance during extended outbreaks or pandemics. The framework integrates regular reviews of the performance of a genomic surveillance system and highlights the importance of ongoing monitoring and the identification and implementation of improvements to whole genome sequencing methods to enhance public health responses to pathogen outbreaks | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a genomic surveillance | |
| 650 | 4 | |a public health | |
| 650 | 4 | |a viral sequencing | |
| 650 | 4 | |a whole genome sequencing | |
| 700 | 1 | |a Johnson-Mackinnon, Jessica |e verfasserin |4 aut | |
| 700 | 1 | |a Basile, Kerri |e verfasserin |4 aut | |
| 700 | 1 | |a Fong, Winkie |e verfasserin |4 aut | |
| 700 | 1 | |a Suster, Carl J E |e verfasserin |4 aut | |
| 700 | 1 | |a Gall, Mailie |e verfasserin |4 aut | |
| 700 | 1 | |a Agius, Jessica |e verfasserin |4 aut | |
| 700 | 1 | |a Chandra, Shona |e verfasserin |4 aut | |
| 700 | 1 | |a Draper, Jenny |e verfasserin |4 aut | |
| 700 | 1 | |a Martinez, Elena |e verfasserin |4 aut | |
| 700 | 1 | |a Drew, Alexander |e verfasserin |4 aut | |
| 700 | 1 | |a Wang, Qinning |e verfasserin |4 aut | |
| 700 | 1 | |a Chen, Sharon C |e verfasserin |4 aut | |
| 700 | 1 | |a Kok, Jen |e verfasserin |4 aut | |
| 700 | 1 | |a Dwyer, Dominic E |e verfasserin |4 aut | |
| 700 | 1 | |a Sintchenko, Vitali |e verfasserin |4 aut | |
| 700 | 1 | |a Rockett, Rebecca J |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Microbiology spectrum |d 2013 |g 11(2023), 6 vom: 12. Dez., Seite e0220223 |w (DE-627)NLM241847044 |x 2165-0497 |7 nnns |
| 773 | 1 | 8 | |g volume:11 |g year:2023 |g number:6 |g day:12 |g month:12 |g pages:e0220223 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1128/spectrum.02202-23 |3 Volltext |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a GBV_NLM | ||
| 951 | |a AR | ||
| 952 | |d 11 |j 2023 |e 6 |b 12 |c 12 |h e0220223 | ||