Annotation Cost Minimization for Ultrasound Image Segmentation using Cross-domain Transfer Learning
Deep learning techniques can help minimize inter-physician analysis variability and the medical expert workloads, thereby enabling more accurate diagnoses. However, their implementation requires large-scale annotated dataset whose acquisition incurs heavy time and human-expertise costs. Hence, to significantly minimize the annotation cost, this study presents a novel framework that enables the deployment of deep learning methods in ultrasound (US) image segmentation requiring only very limited manually annotated samples. We propose SegMix, a fast and efficient approach that exploits a segment-paste-blend concept to generate large number of annotated samples based on a few manually acquired labels. Besides, a series of US-specific augmentation strategies built upon image enhancement algorithms are introduced to make maximum use of the available limited number of manually delineated images. The feasibility of the proposed framework is validated on the left ventricle (LV) segmentation and fetal head (FH) segmentation tasks, respectively. Experimental results demonstrate that using only 10 manually annotated images, the proposed framework can achieve a Dice and JI of 82.61% and 83.92%, and 88.42% and 89.27% for LV segmentation and FH segmentation, respectively. Compared with training using the entire training set, there is over 98% of annotation cost reduction while achieving comparable segmentation performance. This indicates that the proposed framework enables satisfactory deep leaning performance when very limited number of annotated samples is available. Therefore, we believe that it can be a reliable solution for annotation cost reduction in medical image analysis.
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2023 |
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| Erschienen: |
2023 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:PP |
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| Enthalten in: |
IEEE journal of biomedical and health informatics - PP(2023) vom: 16. Jan. |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Monkam, Patrice [VerfasserIn] |
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Date Revised 06.04.2023 published: Print-Electronic Citation Status Publisher |
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| doi: |
10.1109/JBHI.2023.3236989 |
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| Förderinstitution / Projekttitel: |
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NLM355265915 |
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| 520 | |a Deep learning techniques can help minimize inter-physician analysis variability and the medical expert workloads, thereby enabling more accurate diagnoses. However, their implementation requires large-scale annotated dataset whose acquisition incurs heavy time and human-expertise costs. Hence, to significantly minimize the annotation cost, this study presents a novel framework that enables the deployment of deep learning methods in ultrasound (US) image segmentation requiring only very limited manually annotated samples. We propose SegMix, a fast and efficient approach that exploits a segment-paste-blend concept to generate large number of annotated samples based on a few manually acquired labels. Besides, a series of US-specific augmentation strategies built upon image enhancement algorithms are introduced to make maximum use of the available limited number of manually delineated images. The feasibility of the proposed framework is validated on the left ventricle (LV) segmentation and fetal head (FH) segmentation tasks, respectively. Experimental results demonstrate that using only 10 manually annotated images, the proposed framework can achieve a Dice and JI of 82.61% and 83.92%, and 88.42% and 89.27% for LV segmentation and FH segmentation, respectively. Compared with training using the entire training set, there is over 98% of annotation cost reduction while achieving comparable segmentation performance. This indicates that the proposed framework enables satisfactory deep leaning performance when very limited number of annotated samples is available. Therefore, we believe that it can be a reliable solution for annotation cost reduction in medical image analysis | ||
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