The Type 2 Diabetes Knowledge Portal : An open access genetic resource dedicated to type 2 diabetes and related traits

Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved..

Associations between human genetic variation and clinical phenotypes have become a foundation of biomedical research. Most repositories of these data seek to be disease-agnostic and therefore lack disease-focused views. The Type 2 Diabetes Knowledge Portal (T2DKP) is a public resource of genetic datasets and genomic annotations dedicated to type 2 diabetes (T2D) and related traits. Here, we seek to make the T2DKP more accessible to prospective users and more useful to existing users. First, we evaluate the T2DKP's comprehensiveness by comparing its datasets with those of other repositories. Second, we describe how researchers unfamiliar with human genetic data can begin using and correctly interpreting them via the T2DKP. Third, we describe how existing users can extend their current workflows to use the full suite of tools offered by the T2DKP. We finally discuss the lessons offered by the T2DKP toward the goal of democratizing access to complex disease genetic results.

Medienart:

E-Artikel

Erscheinungsjahr:

2023

Erschienen:

2023

Enthalten in:

Zur Gesamtaufnahme - volume:35

Enthalten in:

Cell metabolism - 35(2023), 4 vom: 04. Apr., Seite 695-710.e6

Sprache:

Englisch

Beteiligte Personen:

Costanzo, Maria C [VerfasserIn]
von Grotthuss, Marcin [VerfasserIn]
Massung, Jeffrey [VerfasserIn]
Jang, Dongkeun [VerfasserIn]
Caulkins, Lizz [VerfasserIn]
Koesterer, Ryan [VerfasserIn]
Gilbert, Clint [VerfasserIn]
Welch, Ryan P [VerfasserIn]
Kudtarkar, Parul [VerfasserIn]
Hoang, Quy [VerfasserIn]
Boughton, Andrew P [VerfasserIn]
Singh, Preeti [VerfasserIn]
Sun, Ying [VerfasserIn]
Duby, Marc [VerfasserIn]
Moriondo, Annie [VerfasserIn]
Nguyen, Trang [VerfasserIn]
Smadbeck, Patrick [VerfasserIn]
Alexander, Benjamin R [VerfasserIn]
Brandes, MacKenzie [VerfasserIn]
Carmichael, Mary [VerfasserIn]
Dornbos, Peter [VerfasserIn]
Green, Todd [VerfasserIn]
Huellas-Bruskiewicz, Kenneth C [VerfasserIn]
Ji, Yue [VerfasserIn]
Kluge, Alexandria [VerfasserIn]
McMahon, Aoife C [VerfasserIn]
Mercader, Josep M [VerfasserIn]
Ruebenacker, Oliver [VerfasserIn]
Sengupta, Sebanti [VerfasserIn]
Spalding, Dylan [VerfasserIn]
Taliun, Daniel [VerfasserIn]
AMP-T2D Consortium [VerfasserIn]
Smith, Philip [VerfasserIn]
Thomas, Melissa K [VerfasserIn]
Akolkar, Beena [VerfasserIn]
Brosnan, M Julia [VerfasserIn]
Cherkas, Andriy [VerfasserIn]
Chu, Audrey Y [VerfasserIn]
Fauman, Eric B [VerfasserIn]
Fox, Caroline S [VerfasserIn]
Kamphaus, Tania Nayak [VerfasserIn]
Miller, Melissa R [VerfasserIn]
Nguyen, Lynette [VerfasserIn]
Parsa, Afshin [VerfasserIn]
Reilly, Dermot F [VerfasserIn]
Ruetten, Hartmut [VerfasserIn]
Wholley, David [VerfasserIn]
Zaghloul, Norann A [VerfasserIn]
Abecasis, Gonçalo R [VerfasserIn]
Altshuler, David [VerfasserIn]
Keane, Thomas M [VerfasserIn]
McCarthy, Mark I [VerfasserIn]
Gaulton, Kyle J [VerfasserIn]
Florez, Jose C [VerfasserIn]
Boehnke, Michael [VerfasserIn]
Burtt, Noël P [VerfasserIn]
Flannick, Jason [VerfasserIn]
Abecasis, Gonçalo [Sonstige Person]
Akolkar, Beena [Sonstige Person]
Alexander, Benjamin R [Sonstige Person]
Allred, Nicholette D [Sonstige Person]
Altshuler, David [Sonstige Person]
Below, Jennifer E [Sonstige Person]
Bergman, Richard [Sonstige Person]
Beulens, Joline W J [Sonstige Person]
Blangero, John [Sonstige Person]
Boehnke, Michael [Sonstige Person]
Bokvist, Krister [Sonstige Person]
Bottinger, Erwin [Sonstige Person]
Boughton, Andrew P [Sonstige Person]
Bowden, Donald [Sonstige Person]
Brosnan, M Julia [Sonstige Person]
Brown, Christopher [Sonstige Person]
Bruskiewicz, Kenneth [Sonstige Person]
Burtt, Noël P [Sonstige Person]
Carmichael, Mary [Sonstige Person]
Caulkins, Lizz [Sonstige Person]
Cebola, Inês [Sonstige Person]
Chambers, John [Sonstige Person]
Ida Chen, Yii-Der [Sonstige Person]
Cherkas, Andriy [Sonstige Person]
Chu, Audrey Y [Sonstige Person]
Clark, Christopher [Sonstige Person]
Claussnitzer, Melina [Sonstige Person]
Costanzo, Maria C [Sonstige Person]
Cox, Nancy J [Sonstige Person]
Hoed, Marcel den [Sonstige Person]
Dong, Duc [Sonstige Person]
Duby, Marc [Sonstige Person]
Duggirala, Ravindranath [Sonstige Person]
Dupuis, Josée [Sonstige Person]
Elders, Petra J M [Sonstige Person]
Engreitz, Jesse M [Sonstige Person]
Fauman, Eric [Sonstige Person]
Ferrer, Jorge [Sonstige Person]
Flannick, Jason [Sonstige Person]
Flicek, Paul [Sonstige Person]
Flickinger, Matthew [Sonstige Person]
Florez, Jose C [Sonstige Person]
Fox, Caroline S [Sonstige Person]
Frayling, Timothy M [Sonstige Person]
Frazer, Kelly A [Sonstige Person]
Gaulton, Kyle J [Sonstige Person]
Gilbert, Clint [Sonstige Person]
Gloyn, Anna L [Sonstige Person]
Green, Todd [Sonstige Person]
Hanis, Craig L [Sonstige Person]
Hanson, Robert [Sonstige Person]
Hattersley, Andrew T [Sonstige Person]
Hoang, Quy [Sonstige Person]
Im, Hae Kyung [Sonstige Person]
Iqbal, Sidra [Sonstige Person]
Jacobs, Suzanne B R [Sonstige Person]
Jang, Dong-Keun [Sonstige Person]
Jordan, Tad [Sonstige Person]
Kamphaus, Tania [Sonstige Person]
Karpe, Fredrik [Sonstige Person]
Keane, Thomas M [Sonstige Person]
Kim, Seung K [Sonstige Person]
Kluge, Alexandria [Sonstige Person]
Koesterer, Ryan [Sonstige Person]
Kudtarkar, Parul [Sonstige Person]
Lage, Kasper [Sonstige Person]
Lange, Leslie A [Sonstige Person]
Lazar, Mitchell [Sonstige Person]
Lehman, Donna [Sonstige Person]
Liu, Ching-Ti [Sonstige Person]
Loos, Ruth J F [Sonstige Person]
Ma, Ronald Ching-Wan [Sonstige Person]
MacDonald, Patrick [Sonstige Person]
Massung, Jeffrey [Sonstige Person]
Maurano, Matthew T [Sonstige Person]
McCarthy, Mark I [Sonstige Person]
McVean, Gil [Sonstige Person]
Meigs, James B [Sonstige Person]
Mercader, Josep M [Sonstige Person]
Miller, Melissa R [Sonstige Person]
Mitchell, Braxton [Sonstige Person]
Mohlke, Karen L [Sonstige Person]
Morabito, Samuel [Sonstige Person]
Morgan, Claire [Sonstige Person]
Mullican, Shannon [Sonstige Person]
Narendra, Sharvari [Sonstige Person]
Ng, Maggie C Y [Sonstige Person]
Nguyen, Lynette [Sonstige Person]
Palmer, Colin N A [Sonstige Person]
Parker, Stephen C J [Sonstige Person]
Parrado, Antonio [Sonstige Person]
Parsa, Afshin [Sonstige Person]
Pawlyk, Aaron C [Sonstige Person]
Pearson, Ewan R [Sonstige Person]
Plump, Andrew [Sonstige Person]
Province, Michael [Sonstige Person]
Quertermous, Thomas [Sonstige Person]
Redline, Susan [Sonstige Person]
Reilly, Dermot F [Sonstige Person]
Ren, Bing [Sonstige Person]

Links:

Volltext

Themen:

CMDKP
Data sharing
Diabetes
Effector genes
GWAS
Genetic associations
Genetic support
Genomics
Journal Article
Portal
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
T2DKP

Anmerkungen:

Date Completed 07.04.2023

Date Revised 15.04.2024

published: Print-Electronic

Citation Status MEDLINE

doi:

10.1016/j.cmet.2023.03.001

funding:

Förderinstitution / Projekttitel:

PPN (Katalog-ID):

NLM354685465