PLK2 Single Nucleotide Variant in Gastric Cancer Patients Affects miR-23b-5p Binding
Copyright © 2022. Korean Gastric Cancer Association..
PURPOSE: Chromosomal instability is a hallmark of gastric cancer (GC). It can be driven by single nucleotide variants (SNVs) in cell cycle genes. We investigated the associations between SNVs in candidate genes, PLK2, PLK3, and ATM, and GC risk and clinicopathological features.
MATERIALS AND METHODS: The genotyping study included 542 patients with GC and healthy controls. Generalized linear models were used for the risk and clinicopathological association analyses. Survival analysis was performed using the Kaplan-Meier method. The binding of candidate miRs was analyzed using a luciferase reporter assay.
RESULTS: The PLK2 Crs15009-Crs963615 haplotype was under-represented in the GC group compared to that in the control group (Pcorr=0.050). Male patients with the PLK2 rs963615 CT genotype had a lower risk of GC, whereas female patients had a higher risk (P=0.023; P=0.026). The PLK2 rs963615 CT genotype was associated with the absence of vascular invasion (P=0.012). The PLK3 rs12404160 AA genotype was associated with a higher risk of GC in the male population (P=0.015). The ATM Trs228589-Ars189037-Grs4585 haplotype was associated with a higher risk of GC (P<0.001). The ATM rs228589, rs189037, and rs4585 genotypes TA+AA, AG+GG, and TG+GG were associated with the absence of perineural invasion (P=0.034). In vitro analysis showed that the cancer-associated miR-23b-5p mimic specifically bound to the PLK2 rs15009 G allele (P=0.0097). Moreover, low miR-23b expression predicted longer 10-year survival (P=0.0066) in patients with GC.
CONCLUSIONS: PLK2, PLK3, and ATM SNVs could potentially be helpful for the prediction of GC risk and clinicopathological features. PLK2 rs15009 affects the binding of miR-23b-5p. MiR-23b-5p expression status could serve as a prognostic marker for survival in patients with GC.
| Medienart: |
E-Artikel |
|---|
| Erscheinungsjahr: |
2022 |
|---|---|
| Erschienen: |
2022 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:22 |
|---|---|
| Enthalten in: |
Journal of gastric cancer - 22(2022), 4 vom: 27. Okt., Seite 348-368 |
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Dominkuš, Pia Pužar [VerfasserIn] |
|---|
| Links: |
|---|
| Themen: |
Cell cycle genes |
|---|
| Anmerkungen: |
Date Revised 09.11.2022 published: Print Citation Status PubMed-not-MEDLINE |
|---|
| doi: |
10.5230/jgc.2022.22.e31 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
NLM348301812 |
|---|
| LEADER | 01000naa a22002652 4500 | ||
|---|---|---|---|
| 001 | NLM348301812 | ||
| 003 | DE-627 | ||
| 005 | 20231226205503.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 231226s2022 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.5230/jgc.2022.22.e31 |2 doi | |
| 028 | 5 | 2 | |a pubmed24n1160.xml |
| 035 | |a (DE-627)NLM348301812 | ||
| 035 | |a (NLM)36316110 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Dominkuš, Pia Pužar |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a PLK2 Single Nucleotide Variant in Gastric Cancer Patients Affects miR-23b-5p Binding |
| 264 | 1 | |c 2022 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a ƒaComputermedien |b c |2 rdamedia | ||
| 338 | |a ƒa Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Date Revised 09.11.2022 | ||
| 500 | |a published: Print | ||
| 500 | |a Citation Status PubMed-not-MEDLINE | ||
| 520 | |a Copyright © 2022. Korean Gastric Cancer Association. | ||
| 520 | |a PURPOSE: Chromosomal instability is a hallmark of gastric cancer (GC). It can be driven by single nucleotide variants (SNVs) in cell cycle genes. We investigated the associations between SNVs in candidate genes, PLK2, PLK3, and ATM, and GC risk and clinicopathological features | ||
| 520 | |a MATERIALS AND METHODS: The genotyping study included 542 patients with GC and healthy controls. Generalized linear models were used for the risk and clinicopathological association analyses. Survival analysis was performed using the Kaplan-Meier method. The binding of candidate miRs was analyzed using a luciferase reporter assay | ||
| 520 | |a RESULTS: The PLK2 Crs15009-Crs963615 haplotype was under-represented in the GC group compared to that in the control group (Pcorr=0.050). Male patients with the PLK2 rs963615 CT genotype had a lower risk of GC, whereas female patients had a higher risk (P=0.023; P=0.026). The PLK2 rs963615 CT genotype was associated with the absence of vascular invasion (P=0.012). The PLK3 rs12404160 AA genotype was associated with a higher risk of GC in the male population (P=0.015). The ATM Trs228589-Ars189037-Grs4585 haplotype was associated with a higher risk of GC (P<0.001). The ATM rs228589, rs189037, and rs4585 genotypes TA+AA, AG+GG, and TG+GG were associated with the absence of perineural invasion (P=0.034). In vitro analysis showed that the cancer-associated miR-23b-5p mimic specifically bound to the PLK2 rs15009 G allele (P=0.0097). Moreover, low miR-23b expression predicted longer 10-year survival (P=0.0066) in patients with GC | ||
| 520 | |a CONCLUSIONS: PLK2, PLK3, and ATM SNVs could potentially be helpful for the prediction of GC risk and clinicopathological features. PLK2 rs15009 affects the binding of miR-23b-5p. MiR-23b-5p expression status could serve as a prognostic marker for survival in patients with GC | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a Cell cycle genes | |
| 650 | 4 | |a Chromosomal instability | |
| 650 | 4 | |a Gastric cancer | |
| 650 | 4 | |a Genetic variation | |
| 650 | 4 | |a MiR-23b-5p | |
| 700 | 1 | |a Mesic, Aner |e verfasserin |4 aut | |
| 700 | 1 | |a Hudler, Petra |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Journal of gastric cancer |d 2012 |g 22(2022), 4 vom: 27. Okt., Seite 348-368 |w (DE-627)NLM216991897 |x 2093-582X |7 nnns |
| 773 | 1 | 8 | |g volume:22 |g year:2022 |g number:4 |g day:27 |g month:10 |g pages:348-368 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.5230/jgc.2022.22.e31 |3 Volltext |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a GBV_NLM | ||
| 951 | |a AR | ||
| 952 | |d 22 |j 2022 |e 4 |b 27 |c 10 |h 348-368 | ||