Videomics of the Upper Aero-Digestive Tract Cancer : Deep Learning Applied to White Light and Narrow Band Imaging for Automatic Segmentation of Endoscopic Images
Copyright © 2022 Azam, Sampieri, Ioppi, Benzi, Giordano, De Vecchi, Campagnari, Li, Guastini, Paderno, Moccia, Piazza, Mattos and Peretti..
Introduction: Narrow Band Imaging (NBI) is an endoscopic visualization technique useful for upper aero-digestive tract (UADT) cancer detection and margins evaluation. However, NBI analysis is strongly operator-dependent and requires high expertise, thus limiting its wider implementation. Recently, artificial intelligence (AI) has demonstrated potential for applications in UADT videoendoscopy. Among AI methods, deep learning algorithms, and especially convolutional neural networks (CNNs), are particularly suitable for delineating cancers on videoendoscopy. This study is aimed to develop a CNN for automatic semantic segmentation of UADT cancer on endoscopic images.
Materials and Methods: A dataset of white light and NBI videoframes of laryngeal squamous cell carcinoma (LSCC) was collected and manually annotated. A novel DL segmentation model (SegMENT) was designed. SegMENT relies on DeepLabV3+ CNN architecture, modified using Xception as a backbone and incorporating ensemble features from other CNNs. The performance of SegMENT was compared to state-of-the-art CNNs (UNet, ResUNet, and DeepLabv3). SegMENT was then validated on two external datasets of NBI images of oropharyngeal (OPSCC) and oral cavity SCC (OSCC) obtained from a previously published study. The impact of in-domain transfer learning through an ensemble technique was evaluated on the external datasets.
Results: 219 LSCC patients were retrospectively included in the study. A total of 683 videoframes composed the LSCC dataset, while the external validation cohorts of OPSCC and OCSCC contained 116 and 102 images. On the LSCC dataset, SegMENT outperformed the other DL models, obtaining the following median values: 0.68 intersection over union (IoU), 0.81 dice similarity coefficient (DSC), 0.95 recall, 0.78 precision, 0.97 accuracy. For the OCSCC and OPSCC datasets, results were superior compared to previously published data: the median performance metrics were, respectively, improved as follows: DSC=10.3% and 11.9%, recall=15.0% and 5.1%, precision=17.0% and 14.7%, accuracy=4.1% and 10.3%.
Conclusion: SegMENT achieved promising performances, showing that automatic tumor segmentation in endoscopic images is feasible even within the highly heterogeneous and complex UADT environment. SegMENT outperformed the previously published results on the external validation cohorts. The model demonstrated potential for improved detection of early tumors, more precise biopsies, and better selection of resection margins.
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2022 |
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| Erschienen: |
2022 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:12 |
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| Enthalten in: |
Frontiers in oncology - 12(2022) vom: 16., Seite 900451 |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Azam, Muhammad Adeel [VerfasserIn] |
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| Links: |
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| Themen: |
Computer vision |
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| Anmerkungen: |
Date Revised 16.07.2022 published: Electronic-eCollection Citation Status PubMed-not-MEDLINE |
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| doi: |
10.3389/fonc.2022.900451 |
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| Förderinstitution / Projekttitel: |
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NLM342412043 |
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| 100 | 1 | |a Azam, Muhammad Adeel |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a Videomics of the Upper Aero-Digestive Tract Cancer |b Deep Learning Applied to White Light and Narrow Band Imaging for Automatic Segmentation of Endoscopic Images |
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| 500 | |a Citation Status PubMed-not-MEDLINE | ||
| 520 | |a Copyright © 2022 Azam, Sampieri, Ioppi, Benzi, Giordano, De Vecchi, Campagnari, Li, Guastini, Paderno, Moccia, Piazza, Mattos and Peretti. | ||
| 520 | |a Introduction: Narrow Band Imaging (NBI) is an endoscopic visualization technique useful for upper aero-digestive tract (UADT) cancer detection and margins evaluation. However, NBI analysis is strongly operator-dependent and requires high expertise, thus limiting its wider implementation. Recently, artificial intelligence (AI) has demonstrated potential for applications in UADT videoendoscopy. Among AI methods, deep learning algorithms, and especially convolutional neural networks (CNNs), are particularly suitable for delineating cancers on videoendoscopy. This study is aimed to develop a CNN for automatic semantic segmentation of UADT cancer on endoscopic images | ||
| 520 | |a Materials and Methods: A dataset of white light and NBI videoframes of laryngeal squamous cell carcinoma (LSCC) was collected and manually annotated. A novel DL segmentation model (SegMENT) was designed. SegMENT relies on DeepLabV3+ CNN architecture, modified using Xception as a backbone and incorporating ensemble features from other CNNs. The performance of SegMENT was compared to state-of-the-art CNNs (UNet, ResUNet, and DeepLabv3). SegMENT was then validated on two external datasets of NBI images of oropharyngeal (OPSCC) and oral cavity SCC (OSCC) obtained from a previously published study. The impact of in-domain transfer learning through an ensemble technique was evaluated on the external datasets | ||
| 520 | |a Results: 219 LSCC patients were retrospectively included in the study. A total of 683 videoframes composed the LSCC dataset, while the external validation cohorts of OPSCC and OCSCC contained 116 and 102 images. On the LSCC dataset, SegMENT outperformed the other DL models, obtaining the following median values: 0.68 intersection over union (IoU), 0.81 dice similarity coefficient (DSC), 0.95 recall, 0.78 precision, 0.97 accuracy. For the OCSCC and OPSCC datasets, results were superior compared to previously published data: the median performance metrics were, respectively, improved as follows: DSC=10.3% and 11.9%, recall=15.0% and 5.1%, precision=17.0% and 14.7%, accuracy=4.1% and 10.3% | ||
| 520 | |a Conclusion: SegMENT achieved promising performances, showing that automatic tumor segmentation in endoscopic images is feasible even within the highly heterogeneous and complex UADT environment. SegMENT outperformed the previously published results on the external validation cohorts. The model demonstrated potential for improved detection of early tumors, more precise biopsies, and better selection of resection margins | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a computer vision | |
| 650 | 4 | |a endoscopy | |
| 650 | 4 | |a laryngoscopy | |
| 650 | 4 | |a larynx cancer | |
| 650 | 4 | |a machine learning | |
| 650 | 4 | |a oral cancer | |
| 650 | 4 | |a oropharynx cancer | |
| 650 | 4 | |a otorhinolaryngology | |
| 700 | 1 | |a Sampieri, Claudio |e verfasserin |4 aut | |
| 700 | 1 | |a Ioppi, Alessandro |e verfasserin |4 aut | |
| 700 | 1 | |a Benzi, Pietro |e verfasserin |4 aut | |
| 700 | 1 | |a Giordano, Giorgio Gregory |e verfasserin |4 aut | |
| 700 | 1 | |a De Vecchi, Marta |e verfasserin |4 aut | |
| 700 | 1 | |a Campagnari, Valentina |e verfasserin |4 aut | |
| 700 | 1 | |a Li, Shunlei |e verfasserin |4 aut | |
| 700 | 1 | |a Guastini, Luca |e verfasserin |4 aut | |
| 700 | 1 | |a Paderno, Alberto |e verfasserin |4 aut | |
| 700 | 1 | |a Moccia, Sara |e verfasserin |4 aut | |
| 700 | 1 | |a Piazza, Cesare |e verfasserin |4 aut | |
| 700 | 1 | |a Mattos, Leonardo S |e verfasserin |4 aut | |
| 700 | 1 | |a Peretti, Giorgio |e verfasserin |4 aut | |
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