Bioinformatics analysis of safflower WD40 transcription factor family genes
The WD40 transcription factor family is a gene superfamily widely found in eukaryotes, which is closely related to plant growth and development regulation. It has been reported that the WD40 transcription factor was involved in the synthesis of anthocyanins, which is one of the vital components of safflower flavonoid compounds. In this study, 40 CtWD40 members in the safflower genome were identified though bioinformatics tools and gene expression analysis methods. According to the WD40 protein sequence and phylogenetic characteristics of Arabidopsis and other plants, the safflower CtWD40 family was classified into 7 subfamilies. Conservative motif analysis was used to reveal the specific conserved motifs and gene structures of each subfamily member, and there exist a certain degree of similarities in the conserved motifs and gene structure between the closely related family members. Subsequently, the search for cis-acting elements of gene promoters found CtWD40-specific promoter elements, revealing the metabolic pathways which may involve. Next, enrichment of function analysis was employed to analyze the functional categories and cellular localization of the CtWD40 protein. Furthermore, the interactions between CtWD40 proteins predicted its potential regulatory function. Finally, 19 members of the safflower CtWD40 subfamily were analyzed by qRT-PCR, the result showed the expression patterns of these members were different in diverse tissue and flowering period. This study provides a basis for the functional and expression research of the CtWD40 genes.
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2020 |
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| Erschienen: |
2020 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:45 |
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| Enthalten in: |
Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica - 45(2020), 14 vom: 28. Juli, Seite 3432-3440 |
| Sprache: |
Chinesisch |
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| Beteiligte Personen: |
Wang, Gang [VerfasserIn] |
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| Links: |
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| Themen: |
Bioinformatics analysis |
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| Anmerkungen: |
Date Completed 17.09.2020 Date Revised 17.09.2020 published: Print Citation Status MEDLINE |
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| doi: |
10.19540/j.cnki.cjcmm.20200506.107 |
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| funding: |
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| Förderinstitution / Projekttitel: |
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| PPN (Katalog-ID): |
NLM313017344 |
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| 245 | 1 | 0 | |a Bioinformatics analysis of safflower WD40 transcription factor family genes |
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| 500 | |a published: Print | ||
| 500 | |a Citation Status MEDLINE | ||
| 520 | |a The WD40 transcription factor family is a gene superfamily widely found in eukaryotes, which is closely related to plant growth and development regulation. It has been reported that the WD40 transcription factor was involved in the synthesis of anthocyanins, which is one of the vital components of safflower flavonoid compounds. In this study, 40 CtWD40 members in the safflower genome were identified though bioinformatics tools and gene expression analysis methods. According to the WD40 protein sequence and phylogenetic characteristics of Arabidopsis and other plants, the safflower CtWD40 family was classified into 7 subfamilies. Conservative motif analysis was used to reveal the specific conserved motifs and gene structures of each subfamily member, and there exist a certain degree of similarities in the conserved motifs and gene structure between the closely related family members. Subsequently, the search for cis-acting elements of gene promoters found CtWD40-specific promoter elements, revealing the metabolic pathways which may involve. Next, enrichment of function analysis was employed to analyze the functional categories and cellular localization of the CtWD40 protein. Furthermore, the interactions between CtWD40 proteins predicted its potential regulatory function. Finally, 19 members of the safflower CtWD40 subfamily were analyzed by qRT-PCR, the result showed the expression patterns of these members were different in diverse tissue and flowering period. This study provides a basis for the functional and expression research of the CtWD40 genes | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a WD40 gene | |
| 650 | 4 | |a bioinformatics analysis | |
| 650 | 4 | |a expression analyses | |
| 650 | 4 | |a phylogeny | |
| 650 | 4 | |a safflower | |
| 650 | 7 | |a Plant Proteins |2 NLM | |
| 650 | 7 | |a Transcription Factors |2 NLM | |
| 700 | 1 | |a Zhang, Zheng-Ren |e verfasserin |4 aut | |
| 700 | 1 | |a Wang, Yi-Fei |e verfasserin |4 aut | |
| 700 | 1 | |a Hong, Ying-Qi |e verfasserin |4 aut | |
| 700 | 1 | |a Liu, Xiu-Ming |e verfasserin |4 aut | |
| 700 | 1 | |a Yao, Na |e verfasserin |4 aut | |
| 700 | 1 | |a Dong, Yuan-Yuan |e verfasserin |4 aut | |
| 700 | 1 | |a Li, Hai-Yan |e verfasserin |4 aut | |
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