The complete chloroplast genome sequence of Cinnamomum kotoense
© 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group..
The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus.
| Medienart: |
E-Artikel |
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| Erscheinungsjahr: |
2019 |
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| Erschienen: |
2019 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:5 |
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| Enthalten in: |
Mitochondrial DNA. Part B, Resources - 5(2019), 1 vom: 18. Dez., Seite 331-332 |
| Sprache: |
Englisch |
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| Beteiligte Personen: |
Yuan, Xiaolong [VerfasserIn] |
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| Links: |
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| Themen: |
Chloroplast |
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| Anmerkungen: |
Date Revised 31.12.2020 published: Electronic Citation Status PubMed-not-MEDLINE |
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| doi: |
10.1080/23802359.2019.1703604 |
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| funding: |
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| Förderinstitution / Projekttitel: |
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| PPN (Katalog-ID): |
NLM319308472 |
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| 520 | |a © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. | ||
| 520 | |a The first complete chloroplast genome (cpDNA) sequence of Cinnamomum kotoense was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,010 bp in length, contains a large single copy region (LSC) of 93,676 bp and a small single copy region (SSC) of 18,830 bp, which were separated by a pair of inverted repeats (IR) regions of 20,752 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.2%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.3%, respectively. Further phylogenomic analysis showed that C. kotoense and Cinnamomum bodinieri clustered in a clade in Cinnamomum genus | ||
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| 650 | 4 | |a phylogenetic analysis | |
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