Data-mining bioinformatics : suggesting Arabidopsis thaliana L-type lectin receptor kinase IX.2 (LecRK-IX.2) modulate metabolites and abiotic stress responses
The central role of the Arabidopsis LecRK-IX.2 gene in response to biotic stress has been well established by an array of workers. So far, the role of LecRK-IX.2 in abiotic stresses has not been investigated systematically. Here, we have first investigated a comprehensive in silico survey to explore the regulation, expression pattern in responses to a wide range of abiotic stresses. The present study reveals that the LecRK-IX.2 promoter has numerous potential cis-regulatory elements (CREs) that are regulated by different stresses. AtGenExpress data elucidate that LecRK-IX.2 gene plays a potential role in responses to cold, osmotic, drought, salt, UV-B, heat, wound, and genotoxic compound. The expression profile of the co-expressed genes suggests that Arabidopsis LecRK-IX.2 gene might have a potential role in stress responses in a tissue-specific manner. Furthermore, a probable signal transduction mechanism has been described by using protein-protein interaction (PPI) dataset. Moreover, the present data-mining investigations have suggested that LecRK-IX.2 gene modulates cellular metabolites and abiotic stress responses.
| Medienart: |
E-Artikel |
|---|
| Erscheinungsjahr: |
2020 |
|---|---|
| Erschienen: |
2020 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:15 |
|---|---|
| Enthalten in: |
Plant signaling & behavior - 15(2020), 12 vom: 01. Dez., Seite 1818031 |
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Mondal, Raju [VerfasserIn] |
|---|
| Links: |
|---|
| Anmerkungen: |
Date Completed 15.07.2021 Date Revised 04.12.2021 published: Print-Electronic Citation Status MEDLINE |
|---|
| doi: |
10.1080/15592324.2020.1818031 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
NLM314968482 |
|---|
| LEADER | 01000naa a22002652 4500 | ||
|---|---|---|---|
| 001 | NLM314968482 | ||
| 003 | DE-627 | ||
| 005 | 20231225153904.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 231225s2020 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1080/15592324.2020.1818031 |2 doi | |
| 028 | 5 | 2 | |a pubmed24n1049.xml |
| 035 | |a (DE-627)NLM314968482 | ||
| 035 | |a (NLM)32924779 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Mondal, Raju |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a Data-mining bioinformatics |b suggesting Arabidopsis thaliana L-type lectin receptor kinase IX.2 (LecRK-IX.2) modulate metabolites and abiotic stress responses |
| 264 | 1 | |c 2020 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a ƒaComputermedien |b c |2 rdamedia | ||
| 338 | |a ƒa Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Date Completed 15.07.2021 | ||
| 500 | |a Date Revised 04.12.2021 | ||
| 500 | |a published: Print-Electronic | ||
| 500 | |a Citation Status MEDLINE | ||
| 520 | |a The central role of the Arabidopsis LecRK-IX.2 gene in response to biotic stress has been well established by an array of workers. So far, the role of LecRK-IX.2 in abiotic stresses has not been investigated systematically. Here, we have first investigated a comprehensive in silico survey to explore the regulation, expression pattern in responses to a wide range of abiotic stresses. The present study reveals that the LecRK-IX.2 promoter has numerous potential cis-regulatory elements (CREs) that are regulated by different stresses. AtGenExpress data elucidate that LecRK-IX.2 gene plays a potential role in responses to cold, osmotic, drought, salt, UV-B, heat, wound, and genotoxic compound. The expression profile of the co-expressed genes suggests that Arabidopsis LecRK-IX.2 gene might have a potential role in stress responses in a tissue-specific manner. Furthermore, a probable signal transduction mechanism has been described by using protein-protein interaction (PPI) dataset. Moreover, the present data-mining investigations have suggested that LecRK-IX.2 gene modulates cellular metabolites and abiotic stress responses | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a cis-regulatory elements (CREs) | |
| 650 | 4 | |a Arabidopsis | |
| 650 | 4 | |a abiotic stress | |
| 650 | 4 | |a expression | |
| 650 | 4 | |a lectin receptor kinase | |
| 650 | 4 | |a reactive oxygen species (ROS) | |
| 650 | 4 | |a signal transduction | |
| 650 | 7 | |a Arabidopsis Proteins |2 NLM | |
| 650 | 7 | |a Transcription Factors |2 NLM | |
| 650 | 7 | |a ATHLECRK protein, Arabidopsis |2 NLM | |
| 650 | 7 | |a EC 2.7.1.- |2 NLM | |
| 650 | 7 | |a Protein Serine-Threonine Kinases |2 NLM | |
| 650 | 7 | |a EC 2.7.11.1 |2 NLM | |
| 700 | 1 | |a Das, Poushali |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Plant signaling & behavior |d 2006 |g 15(2020), 12 vom: 01. Dez., Seite 1818031 |w (DE-627)NLM189163038 |x 1559-2324 |7 nnns |
| 773 | 1 | 8 | |g volume:15 |g year:2020 |g number:12 |g day:01 |g month:12 |g pages:1818031 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1080/15592324.2020.1818031 |3 Volltext |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a GBV_NLM | ||
| 951 | |a AR | ||
| 952 | |d 15 |j 2020 |e 12 |b 01 |c 12 |h 1818031 | ||