Complete genome sequence of Echinicola rosea JL3085, a xylan and pectin decomposer
Copyright © 2019 Elsevier B.V. All rights reserved..
Marine Bacteroidetes are well known for their functional specialization on the decomposition of polysaccharides which results from a great number of carbohydrate-active enzymes. Here we represent the complete genome of a Bacteroitedes member Echinicola rosea JL3085T that was isolated from surface seawater of the South China Sea. The genome is 6.06 Mbp in size with a GC content of 44.1% and comprises 4613 protein coding genes. A remarkable genomic feature is that the number of glycoside hydrolase genes in the genome of E. rosea JL3085T is high in comparison with most of the sequenced members of marine Bacteroitedes. E. rosea JL3085T genome harbored multi-gene polysaccharide utilization loci (PUL) systems involved in the degradation of pectin, xylan and arabinogalactan. The large diversity of hydrolytic enzymes supports the use of E. rosea JL3085T as a candidate for biotechnological applications in enzymatic conversion of plant polysaccharides.
| Medienart: |
E-Artikel |
|---|
| Erscheinungsjahr: |
2020 |
|---|---|
| Erschienen: |
2020 |
| Enthalten in: |
Zur Gesamtaufnahme - volume:52 |
|---|---|
| Enthalten in: |
Marine genomics - 52(2020) vom: 19. Aug., Seite 100722 |
| Sprache: |
Englisch |
|---|
| Beteiligte Personen: |
Zhan, Peiwen [VerfasserIn] |
|---|
| Links: |
|---|
| Themen: |
89NA02M4RX |
|---|
| Anmerkungen: |
Date Completed 20.07.2020 Date Revised 20.07.2020 published: Print-Electronic Citation Status MEDLINE |
|---|
| doi: |
10.1016/j.margen.2019.100722 |
|---|
| funding: |
|
|---|---|
| Förderinstitution / Projekttitel: |
|
| PPN (Katalog-ID): |
NLM302823476 |
|---|
| LEADER | 01000naa a22002652 4500 | ||
|---|---|---|---|
| 001 | NLM302823476 | ||
| 003 | DE-627 | ||
| 005 | 20231225111534.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 231225s2020 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1016/j.margen.2019.100722 |2 doi | |
| 028 | 5 | 2 | |a pubmed24n1009.xml |
| 035 | |a (DE-627)NLM302823476 | ||
| 035 | |a (NLM)31677976 | ||
| 035 | |a (PII)S1874-7787(19)30173-4 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Zhan, Peiwen |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a Complete genome sequence of Echinicola rosea JL3085, a xylan and pectin decomposer |
| 264 | 1 | |c 2020 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a ƒaComputermedien |b c |2 rdamedia | ||
| 338 | |a ƒa Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Date Completed 20.07.2020 | ||
| 500 | |a Date Revised 20.07.2020 | ||
| 500 | |a published: Print-Electronic | ||
| 500 | |a Citation Status MEDLINE | ||
| 520 | |a Copyright © 2019 Elsevier B.V. All rights reserved. | ||
| 520 | |a Marine Bacteroidetes are well known for their functional specialization on the decomposition of polysaccharides which results from a great number of carbohydrate-active enzymes. Here we represent the complete genome of a Bacteroitedes member Echinicola rosea JL3085T that was isolated from surface seawater of the South China Sea. The genome is 6.06 Mbp in size with a GC content of 44.1% and comprises 4613 protein coding genes. A remarkable genomic feature is that the number of glycoside hydrolase genes in the genome of E. rosea JL3085T is high in comparison with most of the sequenced members of marine Bacteroitedes. E. rosea JL3085T genome harbored multi-gene polysaccharide utilization loci (PUL) systems involved in the degradation of pectin, xylan and arabinogalactan. The large diversity of hydrolytic enzymes supports the use of E. rosea JL3085T as a candidate for biotechnological applications in enzymatic conversion of plant polysaccharides | ||
| 650 | 4 | |a Journal Article | |
| 650 | 4 | |a Bacteroidetes | |
| 650 | 4 | |a Degradation | |
| 650 | 4 | |a Enzyme | |
| 650 | 4 | |a Polysaccharides | |
| 650 | 7 | |a Xylans |2 NLM | |
| 650 | 7 | |a Pectins |2 NLM | |
| 650 | 7 | |a 89NA02M4RX |2 NLM | |
| 700 | 1 | |a Ye, Jianing |e verfasserin |4 aut | |
| 700 | 1 | |a Lin, Xiaopei |e verfasserin |4 aut | |
| 700 | 1 | |a Zhang, Fan |e verfasserin |4 aut | |
| 700 | 1 | |a Lin, Dan |e verfasserin |4 aut | |
| 700 | 1 | |a Zhang, Yao |e verfasserin |4 aut | |
| 700 | 1 | |a Tang, Kai |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Marine genomics |d 2008 |g 52(2020) vom: 19. Aug., Seite 100722 |w (DE-627)NLM206875118 |x 1876-7478 |7 nnns |
| 773 | 1 | 8 | |g volume:52 |g year:2020 |g day:19 |g month:08 |g pages:100722 |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1016/j.margen.2019.100722 |3 Volltext |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a GBV_NLM | ||
| 951 | |a AR | ||
| 952 | |d 52 |j 2020 |b 19 |c 08 |h 100722 | ||