The Cytoscape Automation app article collection

Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic functionality, it relies on community-written apps to deliver specialized functions and analyses. To date, Cytoscape's CyREST feature has allowed researchers to write workflows that call basic Cytoscape functions, but provides no access to its high value app-based functions. With Cytoscape Automation, workflows can now call apps that have been upgraded to expose their functionality. This article collection is a resource to assist readers in quickly and economically leveraging such apps in reproducible workflows that scale independently to large data sets and production runs.

Medienart:

E-Artikel

Erscheinungsjahr:

2018

Erschienen:

2018

Enthalten in:

Zur Gesamtaufnahme - volume:7

Enthalten in:

F1000Research - 7(2018) vom: 30., Seite 800

Sprache:

Englisch

Beteiligte Personen:

Demchak, Barry [VerfasserIn]
Otasek, David [VerfasserIn]
Pico, Alexander R [VerfasserIn]
Bader, Gary D [VerfasserIn]
Ono, Keiichiro [VerfasserIn]
Settle, Brett [VerfasserIn]
Sage, Eric [VerfasserIn]
Morris, John H [VerfasserIn]
Longabaugh, William [VerfasserIn]
Lopes, Christian [VerfasserIn]
Kucera, Michael [VerfasserIn]
Treister, Adam [VerfasserIn]
Schwikowski, Benno [VerfasserIn]
Molenaar, Piet [VerfasserIn]
Ideker, Trey [VerfasserIn]

Links:

Volltext

Themen:

App
Automation
Cytoscape
Editorial
Network Analysis
Network Biology
Network Visualization

Anmerkungen:

Date Revised 20.11.2019

published: Electronic-eCollection

Citation Status PubMed-not-MEDLINE

doi:

10.12688/f1000research.15355.1

funding:

Förderinstitution / Projekttitel:

PPN (Katalog-ID):

NLM286266253